Each downloadable file contains the difference score between the probability of the functional site in the experimental structure and the probability of the functional site as found in the structure model at the residue level of interest.
Files provided are tab-delimited unless otherwise noted. Download files from pre-computed searches and are updated weekly.
time intervals = 1-Week, 1-Month, 3-Months, 6-Months, & 1-Year
master_ResiRole_[time interval].txt:
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This file has the described information for models addressed in CAMEO from the respective time interval.
Fields:
1. Server ID provided by CAMEO
2. PDB_ID & chain
3. Target Difficulty
4. SeqFEATURE model name
5. Residue type
6. Residue number
7. Target probability
8. Difference Score
Important Notes:
- Servers can be identified by their server alias numbers which are described at the CAMEO website.
- Target difficulty has been defined by CAMEO as follows:
- Easy: Average lDDT greater than or equal to 75
- Medium: Average lDDT is between 50 and 75
- Hard: Average lDDT is less than 50
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The 1-Week download is available here
The 1-Month download is available here
The 3-Months download is available here
The 6-Months download is available here
The 1-Year download is available here
ResiRole: Residue-Level Functional Site Predictions to Gauge the Accuracies of Protein Structure Prediction Techniques. Joshua M. Toth, Paul J. Depietro, Juergen Haas, and William A. McLaughlin, Bioinformatics, btaa712, "https://doi.org/10.1093/bioinformatics/btaa712.